CellProfiler
4.2

Menu Options

  • Using the File Menu
  • Using the Edit Menu
  • Using the Test Menu
  • Using the Window Menu

Display Options

  • Using The Display Window Menu Bar
  • Using The Interactive Navigation Toolbar
  • How To Use The Image Tools

Creating a Project

  • Introduction to Projects
  • Selecting Images for Input
  • Configuring Images for Analysis
  • Loading Image Stacks and Movies
  • Image Ordering

Pipelines

  • How To Build A Pipeline
  • Using the Test Menu
  • Running Your Pipeline

Using Your Output

  • How Measurements are Named
  • Using Spreadsheets and Databases
  • Plate Viewer

Other Features

  • How to replicate the Identify modules on volumetric images
  • Troubleshooting Memory and Speed Issues
  • Batch Processing
  • Configuring Logging
  • Accessing Images From OMERO
  • Using Plugins
  • Debug Shell
  • Widget Inspector

Modules

  • Input
  • File Processing
  • Image Processing
  • Object Processing
  • Measurement
  • Advanced
  • Worm Toolbox
  • Other

Legacy Features

  • MATLAB Format Images

License

  • License information
CellProfiler
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